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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162423829_162425087_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162423829 - 162425087
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCACCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCTTCACCA
Flanking Amino Acid:
VRLATPQFLKEMCIVEEPLE
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.8
0.51
0.9
65.7
34.8
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
63.9
0.43
1.8
79.34
37.2

Associated Gene:

Gene:
NPAS2
Ensembl Gene ID:
ENSAPLG00000016315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032733
162401785 - 162447870
46086
ENSAPLT00000017044
162401785 - 162452677
50893