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Intron Name: Anas_platyrhynchos_platyrhynchos_1_162425207_162433777_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162425207 - 162433777

Intron Length:

8571

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTGCCTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATGAG

U12 Branch Point Sequence:

TGAGGCATGACT

Flanking Amino Acid:

FVGNFRSYSNVPNSTCNGFD

Intron Amino Acid Position:

200

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.81

0.9

80.5

34.9

Major BPS

51.9

0.05

1.6

51.5

43.9

Major PPT

70.7

0.47

0.8

69.2

31.4

Minor 5ss

49.9

-0

2.8

70.4

41.2

Minor BPS

-0.2

2.1

65.71

44.6

Associated Gene:

Gene:

NPAS2

Ensembl Gene ID:

ENSAPLG00000016315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032733

162401785 - 162447870

46086

ENSAPLT00000017044

162401785 - 162452677

50893