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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162433892_162434874_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162433892 - 162434874
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACAATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTCTTTTAACA
Flanking Amino Acid:
TDSASSDYLKTDNELEFYCH
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.9
0.45
1
60.3
44.6
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
71.8
0.68
1.2
75.92
35.5

Associated Gene:

Gene:
NPAS2
Ensembl Gene ID:
ENSAPLG00000016315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032733
162401785 - 162447870
46086
ENSAPLT00000017044
162401785 - 162452677
50893