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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162434996_162441090_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162434996 - 162441090
Intron Length:
6095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TTTTCCTCAAGG
Flanking Amino Acid:
SITPLLGHLPCDVLDQNLLN
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
66.3
0.37
1.9
75.75
42

Associated Gene:

Gene:
NPAS2
Ensembl Gene ID:
ENSAPLG00000016315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032733
162401785 - 162447870
46086
ENSAPLT00000017044
162401785 - 162452677
50893