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Intron Name: Anas_platyrhynchos_platyrhynchos_1_162441181_162444333_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162441181 - 162444333

Intron Length:

3153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGTG

5'SS Class:

strong_major

3'SS Sequence:

ACGTTTTCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

TCCTCCTAAAGC

Flanking Amino Acid:

NEEFTQLMLEALDGFIIAVT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

72.2

39.5

Major BPS

72.7

0.57

72.1

31.1

Major PPT

71.5

0.48

0.8

35.9

Minor 5ss

34.5

-1.8

3.4

45.9

49.3

Minor BPS

55.1

0.14

65.58

46.5

Associated Gene:

Gene:

NPAS2

Ensembl Gene ID:

ENSAPLG00000016315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032733

162401785 - 162447870

46086

ENSAPLT00000017044

162401785 - 162452677

50893