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Intron Name: Anas_platyrhynchos_platyrhynchos_1_162444426_162447659_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162444426 - 162447659

Intron Length:

3234

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTGTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTAAAT

Flanking Amino Acid:

KVIGFLQKHNEVSAQTEISE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

80.7

31.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

79.4

0.66

0.9

73.6

41.7

Minor 5ss

36.5

-1.5

3.6

53.2

Minor BPS

79.5

1.2

92.62

Associated Gene:

Gene:

NPAS2

Ensembl Gene ID:

ENSAPLG00000016315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032733

162401785 - 162447870

46086

ENSAPLT00000017044

162401785 - 162452677

50893