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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162447809_162452623_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162447809 - 162452623
Intron Length:
4815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
MDEDEKDRAKRASRNKSEKK
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78
0.63
0.8
71.5
33.1
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
NPAS2
Ensembl Gene ID:
ENSAPLG00000016315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017044
162401785 - 162452677
50893