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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162769373_162773181_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162769373 - 162773181
Intron Length:
3809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTTCCAAACT
Flanking Amino Acid:
MEPLKVWELQDLSFQAAARI
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
58.2
0.34
2
81.54
39.8

Associated Gene:

Gene:
UGGT2
Ensembl Gene ID:
ENSAPLG00000011310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011839
162750123 - 162835525
85403
ENSAPLT00000034413
162750123 - 162835046
84924