About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162773282_162777706_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162773282 - 162777706
Intron Length:
4425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATTTTTACA
Flanking Amino Acid:
DIAQNFPIRARSLTRVPVDK
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.4
29.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.3
0.86
0.7
83.3
31.7
Minor 5ss
45.7
-0.5
2.9
64.3
47.2
Minor BPS
55.2
0.16
1.6
67
39.5

Associated Gene:

Gene:
UGGT2
Ensembl Gene ID:
ENSAPLG00000011310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034413
162750123 - 162835046
84924
ENSAPLT00000011839
162750123 - 162835525
85403