About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162784168_162786270_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162784168 - 162786270
Intron Length:
2103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAT
Flanking Amino Acid:
ALDIRHSSIIWINDIEKDHS
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
0.9
82.4
29.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88
0.85
0.7
84.9
29.9
Minor 5ss
38.1
-1.3
3
53
39
Minor BPS
73.6
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
UGGT2
Ensembl Gene ID:
ENSAPLG00000011310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034413
162750123 - 162835046
84924
ENSAPLT00000011839
162750123 - 162835525
85403