Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162789267_162793391_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162789267 - 162793391

Intron Length:

4125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTCCTTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TGTTCCTTTATA

Flanking Amino Acid:

ELFYHHNVPLRIGFVFVLNT

Intron Amino Acid Position:

516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

75.2

36.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

82.1

0.72

0.8

76.8

31.9

Minor 5ss

32.1

-2

3.1

40.3

45.6

Minor BPS

72.9

0.71

1.5

80.21

35.3

Associated Gene:

Gene:

UGGT2

Ensembl Gene ID:

ENSAPLG00000011310

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034413

162750123 - 162835046

84924

ENSAPLT00000011839

162750123 - 162835525

85403