Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162793528_162795142_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162793528 - 162795142

Intron Length:

1615

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTTAGTGTC

5'SS Class:

major

3'SS Sequence:

TAATTTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTTTCTAATT

Flanking Amino Acid:

TSQAFTSIINVYHEVKDGNV

Intron Amino Acid Position:

562

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.2

73.8

35.2

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

85.6

0.8

80.3

36.7

Minor 5ss

-1.6

3.2

50.1

39.4

Minor BPS

69.2

0.68

1.6

87.82

31.2

Associated Gene:

Gene:

UGGT2

Ensembl Gene ID:

ENSAPLG00000011310

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034413

162750123 - 162835046

84924

ENSAPLT00000011839

162750123 - 162835525

85403