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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162796714_162797168_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162796714 - 162797168
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATGT
Flanking Amino Acid:
TGFFQRAVFMGLLNDHINAI
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
77.1
31.3
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
50.6
0.1
2
74.99
41.9

Associated Gene:

Gene:
UGGT2
Ensembl Gene ID:
ENSAPLG00000011310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034413
162750123 - 162835046
84924
ENSAPLT00000011839
162750123 - 162835525
85403