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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162805645_162807332_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162805645 - 162807332
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTAATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATA
Flanking Amino Acid:
IVKEMGISTKSGSDFIMKID
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75
0.56
0.9
70.9
38.7
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
76.1
0.82
1.3
84.11
29.4

Associated Gene:

Gene:
UGGT2
Ensembl Gene ID:
ENSAPLG00000011310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034413
162750123 - 162835046
84924
ENSAPLT00000011839
162750123 - 162835525
85403