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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162807429_162809169_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162807429 - 162809169
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
QDAELLKEQHSVVKVDPQEN
Intron Amino Acid Position:
954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
UGGT2
Ensembl Gene ID:
ENSAPLG00000011310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034413
162750123 - 162835046
84924
ENSAPLT00000011839
162750123 - 162835525
85403