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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162824261_162825864_F

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
162824261 - 162825864
Intron Length:
1604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
CTTACGTGACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTATCTTACGT
Flanking Amino Acid:
NFRSKIIKVQVQKKPDKVNE
Intron Amino Acid Position:
1189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
58.1
0.18
1
51.2
42.6
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
57.4
0.31
2
79.88
42.3

Associated Gene:

Gene:
UGGT2
Ensembl Gene ID:
ENSAPLG00000011310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034413
162750123 - 162835046
84924
ENSAPLT00000011839
162750123 - 162835525
85403