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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162826924_162828794_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162826924 - 162828794
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TAGGCTTTTATT
Flanking Amino Acid:
ASGHLYERFLRIMMLSVLRH
Intron Amino Acid Position:
1249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.9
0.79
0.8
80.3
31.7
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
52.5
0.16
1.7
68.12
43.7

Associated Gene:

Gene:
UGGT2
Ensembl Gene ID:
ENSAPLG00000011310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034413
162750123 - 162835046
84924
ENSAPLT00000011839
162750123 - 162835525
85403