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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162844927_162845402_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162844927 - 162845402
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTCCAC
U12 Branch Point Sequence:
ACTGTTCCACCT
Flanking Amino Acid:
AAAKEVLTDPEMRRKFDAGE
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
49.8
-0
1.4
64.2
43
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
36.2
-1.6
3.5
48.3
47.3
Minor BPS
39.1
-0.7
1.9
54
42.2

Associated Gene:

Gene:
DNAJC3
Ensembl Gene ID:
ENSAPLG00000011218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011759
162844769 - 162869971
25203