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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162845552_162846356_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162845552 - 162846356
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TAACCTATAACT
Flanking Amino Acid:
RDYYKILGVKRNARKQEIIK
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
79.1
0.65
0.9
70.9
40
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
61.5
0.44
1.6
77.04
38.6

Associated Gene:

Gene:
DNAJC3
Ensembl Gene ID:
ENSAPLG00000011218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011759
162844769 - 162869971
25203