Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162846490_162850063_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162846490 - 162850063

Intron Length:

3574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGTTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCACAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

TCTTCTTTCACA

Flanking Amino Acid:

AYLLEDLYEEAIKDYETAQA

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

70.4

42.5

Major BPS

0.65

1.1

77.4

37.3

Major PPT

68.9

0.43

71.2

32.6

Minor 5ss

38.9

-1.2

3.6

54.5

49.7

Minor BPS

69.7

0.62

1.7

78.6

38.6

Associated Gene:

Gene:

DNAJC3

Ensembl Gene ID:

ENSAPLG00000011218

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011759

162844769 - 162869971

25203