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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162850185_162850276_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162850185 - 162850276
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
CACCCATGAACT
Flanking Amino Acid:
KERICHCLSKNQQATEAIKV
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
75
0.62
1
65.3
41.5
Major PPT
82.8
0.74
0.6
81.6
23.4
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
49.3
0.03
1.8
65.1
44.5

Associated Gene:

Gene:
DNAJC3
Ensembl Gene ID:
ENSAPLG00000011218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011759
162844769 - 162869971
25203