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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162851755_162853472_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
162851755 - 162853472
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTGAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
YQLGDHELSLSEVRECLKLD
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
53.2
0.07
1.2
55.2
38.2
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
DNAJC3
Ensembl Gene ID:
ENSAPLG00000011218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011759
162844769 - 162869971
25203