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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162862011_162862834_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162862011 - 162862834
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCTTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTCTCTTTAATT
Flanking Amino Acid:
VVELKQDFTSARLQRGQLLL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
82.1
37.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.8
0.78
0.8
82.3
33
Minor 5ss
43.5
-0.7
2.9
65.1
39.1
Minor BPS
83.8
1.14
1
91.31
32.6

Associated Gene:

Gene:
DNAJC3
Ensembl Gene ID:
ENSAPLG00000011218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011759
162844769 - 162869971
25203