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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162862960_162865444_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162862960 - 162865444
Intron Length:
2485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTCGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TAGTTCTGATTC
Flanking Amino Acid:
DALSHFHAAIEGDSDNYIAY
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.7
0.6
0.9
69.4
36.5
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
49.6
-0
1.7
59.82
39.7

Associated Gene:

Gene:
DNAJC3
Ensembl Gene ID:
ENSAPLG00000011218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011759
162844769 - 162869971
25203