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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162884546_162888473_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162884546 - 162888473
Intron Length:
3928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATAACTGAAAT
Flanking Amino Acid:
MLEARASYHQCQLCEKAFMN
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
85.6
0.8
0.8
80
32
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
49.4
0.04
1.8
68.67
40.7

Associated Gene:

Gene:
DZIP1
Ensembl Gene ID:
ENSAPLG00000011935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012445
162883950 - 162915729
31780