Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162888559_162889944_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162888559 - 162889944

Intron Length:

1386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCCCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATGTTTTTAAAT

Flanking Amino Acid:

QRRHPEESQIAEQKRKAKTD

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

78.9

34.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

86.6

0.82

0.6

81.5

30.5

Minor 5ss

44.6

-0.6

2.5

57.8

40.7

Minor BPS

68.3

0.65

1.3

78.91

37.3

Associated Gene:

Gene:

DZIP1

Ensembl Gene ID:

ENSAPLG00000011935

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012445

162883950 - 162915729

31780