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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162890073_162893022_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162890073 - 162893022
Intron Length:
2950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
AAAATATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCGTTTTTAAAA
Flanking Amino Acid:
QQANMVRFSKECEQQKSKEE
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.6
0.42
1
63.4
46.2
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
63.9
0.43
1.4
67.43
39.5

Associated Gene:

Gene:
DZIP1
Ensembl Gene ID:
ENSAPLG00000011935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012445
162883950 - 162915729
31780