Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162893185_162893992_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162893185 - 162893992

Intron Length:

808

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCCTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TGGGCCTCAAAT

Flanking Amino Acid:

LSSRNSTLENQLLALQTSNM

Intron Amino Acid Position:

292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

87.3

Major BPS

79.2

0.73

75.3

39.4

Major PPT

0.65

0.7

25.1

Minor 5ss

41.1

-1

3.4

62.8

Minor BPS

53.9

0.2

1.8

70.5

45.8

Associated Gene:

Gene:

DZIP1

Ensembl Gene ID:

ENSAPLG00000011935

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012445

162883950 - 162915729

31780