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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162894131_162895403_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162894131 - 162895403
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCTA
5'SS Class:
major
3'SS Sequence:
TTCCTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
YKVVKLLEKQESKWTSRIQA
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.6
42.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84
0.76
0.8
79.9
31.1
Minor 5ss
39.9
-1.1
3.4
56.1
48
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
DZIP1
Ensembl Gene ID:
ENSAPLG00000011935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012445
162883950 - 162915729
31780