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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162896848_162897729_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162896848 - 162897729
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTTT
5'SS Class:
major
3'SS Sequence:
TTATTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
NDLIITQKKQIKELSTKSVA
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.3
80.5
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.8
0.71
0.8
82.2
34.4
Minor 5ss
47.6
-0.2
2.6
67.4
43.7
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
DZIP1
Ensembl Gene ID:
ENSAPLG00000011935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012445
162883950 - 162915729
31780