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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162909070_162909401_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162909070 - 162909401
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGATTA
5'SS Class:
major
3'SS Sequence:
TTTATTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTGATTTATTT
Flanking Amino Acid:
EKLESLGIKAGVRGIPSDRL
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1
67.9
33.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
38.3
-1.3
3.2
52.9
44.9
Minor BPS
48.9
0
1.8
67.9
43.9

Associated Gene:

Gene:
DZIP1
Ensembl Gene ID:
ENSAPLG00000011935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012445
162883950 - 162915729
31780