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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162914946_162915646_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162914946 - 162915646
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTATTTTAACA
Flanking Amino Acid:
LPKKSVPKEEGLHEADNTST
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.8
0.63
1
73.4
40.7
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
71.7
0.68
1.2
76.38
34.4

Associated Gene:

Gene:
DZIP1
Ensembl Gene ID:
ENSAPLG00000011935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012445
162883950 - 162915729
31780