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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162918605_162923224_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162918605 - 162923224
Intron Length:
4620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGACTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTTGTTAAAC
Flanking Amino Acid:
EFFDPSYIAQKYELGAALFI
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
72.2
0.5
0.9
66.7
35.3
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
56.2
0.17
2.1
70.75
40.8

Associated Gene:

Gene:
CLDN10
Ensembl Gene ID:
ENSAPLG00000012191
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012703
162917667 - 162929770
12104