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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162923617_162929310_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162923617 - 162929310
Intron Length:
5694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGGGCC
5'SS Class:
major
3'SS Sequence:
CTTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGCCCTCACGT
Flanking Amino Acid:
KDFPSMLALDGYIQACRGLM
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.4
61.9
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86.8
0.83
0.7
81.6
28.7
Minor 5ss
26.4
-2.7
3.3
35
41.1
Minor BPS
44.7
-0.3
2.1
61.19
48.2

Associated Gene:

Gene:
CLDN10
Ensembl Gene ID:
ENSAPLG00000012191
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012703
162917667 - 162929770
12104