Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163079823_163097270_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

163079823 - 163097270

Intron Length:

17448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTCAG

5'SS Class:

strong_major

3'SS Sequence:

TATTGTGTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTT

Flanking Amino Acid:

LPLTFLDFVQTLLQIFGVVA

Intron Amino Acid Position:

848

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.79

70.7

41.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

79.4

0.66

73.2

41.7

Minor 5ss

33.6

-1.9

2.9

45.3

Minor BPS

70.5

0.72

1.5

86.8

33.5

Associated Gene:

Gene:

ABCC4

Ensembl Gene ID:

ENSAPLG00000012227

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024569

162999142 - 163137571

138430

ENSAPLT00000012900

162999142 - 163142406

143265