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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163227584_163232465_F

Intron Information:

Intron Rank:
137600
Intron Class:
major
Intron Phase:
Intron Coordinates:
163227584 - 163232465
Intron Length:
4882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCGGGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAA
U12 Branch Point Sequence:
TGTACAATGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
75.9
0.58
1
68.8
41.9
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
50.4
0.09
2
75.74
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024102
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042951
163227283 - 163238688
11406