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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163232588_163237997_F

Intron Information:

Intron Rank:
137601
Intron Class:
major
Intron Phase:
Intron Coordinates:
163232588 - 163237997
Intron Length:
5410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTGA
5'SS Class:
major
3'SS Sequence:
TTCCTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TGGGCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
63.9
38.8
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
83.3
0.75
0.7
76.2
32.3
Minor 5ss
37.8
-1.4
3
47.7
47.7
Minor BPS
56.7
0.29
1.8
71.92
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024102
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042951
163227283 - 163238688
11406