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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163278079_163278738_R

Intron Information:

Intron Rank:
142515
Intron Class:
major
Intron Phase:
Intron Coordinates:
163278079 - 163278738
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TAAATTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CAATTCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
38.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72
0.5
0.9
65.3
40.5
Minor 5ss
39.1
-1.2
3.3
58.7
45.8
Minor BPS
57
0.3
1.7
69.11
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026936
163277679 - 163281879
4201