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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163311606_163313279_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
163311606 - 163313279
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
VIFREYQREKIITIGVILCQ
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
GPR180
Ensembl Gene ID:
ENSAPLG00000013588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014160
163311399 - 163333725
22327