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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163313358_163313714_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
163313358 - 163313714
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGGGTT
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATAACT
Flanking Amino Acid:
KREFYITFAKACILWFLCHP
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
72.3
37.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
43
-0.8
3.7
63.7
42.5
Minor BPS
69.1
0.68
1.5
85.69
33.9

Associated Gene:

Gene:
GPR180
Ensembl Gene ID:
ENSAPLG00000013588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014160
163311399 - 163333725
22327