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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163313907_163320144_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
163313907 - 163320144
Intron Length:
6238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTTCTAAAT
Flanking Amino Acid:
GIAVVVVVTQSLLLIWEQFE
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
63.9
0.51
1.7
85.47
34.3

Associated Gene:

Gene:
GPR180
Ensembl Gene ID:
ENSAPLG00000013588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014160
163311399 - 163333725
22327