About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163320303_163324061_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
163320303 - 163324061
Intron Length:
3759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTGTTTTCAATA
Flanking Amino Acid:
GVPFMGTLAELCDIVSQIQM
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
76.6
0.6
0.9
74.3
35.3
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
62
0.37
1.5
70.53
36.5

Associated Gene:

Gene:
GPR180
Ensembl Gene ID:
ENSAPLG00000013588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014160
163311399 - 163333725
22327