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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163328165_163331361_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
163328165 - 163331361
Intron Length:
3197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTCTTCCAAA
Flanking Amino Acid:
TEKFSKAQLTMTVNHTEQNL
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
26.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
76.7
0.6
1
78.7
27.4
Minor 5ss
36.8
-1.5
2.9
43.7
38.1
Minor BPS
51.2
0.03
2.1
72.74
39.3

Associated Gene:

Gene:
GPR180
Ensembl Gene ID:
ENSAPLG00000013588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014160
163311399 - 163333725
22327