Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163334730_163335157_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

163334730 - 163335157

Intron Length:

428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TATTTCTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TATTTGTTGATA

Flanking Amino Acid:

PNYLIINLDKLDYCASLKNL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.8

76.2

39.9

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

86.7

0.82

0.7

85.6

28.6

Minor 5ss

32.1

-2

3.1

40.6

45.6

Minor BPS

55.3

0.16

70.16

36.3

Associated Gene:

Gene:

TGDS

Ensembl Gene ID:

ENSAPLG00000013769

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014346

163333968 - 163345850

11883

ENSAPLT00000025059

163333968 - 163346832

12865

ENSAPLT00000018020

163334553 - 163346832

12280