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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163343503_163343981_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
163343503 - 163343981
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CCCTTCTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
CCCTTCTTACTA
Flanking Amino Acid:
AQLAKELIHLIKKTSSESEM
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
71.5
0.48
0.8
65.8
34.6
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
52.7
0.08
1.7
57.43
43.3

Associated Gene:

Gene:
TGDS
Ensembl Gene ID:
ENSAPLG00000013769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025059
163333968 - 163346832
12865
ENSAPLT00000018020
163334553 - 163346832
12280
ENSAPLT00000014346
163333968 - 163345850
11883