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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163344041_163344883_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
163344041 - 163344883
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTCTTTTATC
Flanking Amino Acid:
MEHWMDYVKDSNNDSASFRY
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
91.9
0.94
0.6
88.3
21.4
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
66.6
0.51
1.6
75.02
35.7

Associated Gene:

Gene:
TGDS
Ensembl Gene ID:
ENSAPLG00000013769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014346
163333968 - 163345850
11883