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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163344041_163345833_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
163344041 - 163345833
Intron Length:
1793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TGTTTGTCAACA
Flanking Amino Acid:
MEHWMDYVKDRPANDMRYPM
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
74.8
0.56
1
70
40.3
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
53.1
0.09
2.2
72
40

Associated Gene:

Gene:
TGDS
Ensembl Gene ID:
ENSAPLG00000013769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018020
163334553 - 163346832
12280
ENSAPLT00000025059
163333968 - 163346832
12865