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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163344958_163345833_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
163344958 - 163345833
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTTAAGTAT
5'SS Class:
weak_major
3'SS Sequence:
TGTTTGTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TGTTTGTCAACA
Flanking Amino Acid:
VIRNHISADSNLPMT*
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.2
55.1
38.3
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
74.8
0.56
1
70
40.3
Minor 5ss
36.3
-1.6
3.4
53.3
44.8
Minor BPS
53.1
0.09
2.2
72
40

Associated Gene:

Gene:
TGDS
Ensembl Gene ID:
ENSAPLG00000013769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014346
163333968 - 163345850
11883