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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163373903_163376737_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
163373903 - 163376737
Intron Length:
2835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTATTTTATCT
Flanking Amino Acid:
HYYSVRDTLLGPGRPFTAID
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.6
0.71
0.7
76.9
25.1
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
58.8
0.36
1.6
75.61
41.6

Associated Gene:

Gene:
DCT
Ensembl Gene ID:
ENSAPLG00000013837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014438
163367528 - 163397173
29646