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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163382723_163384146_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
163382723 - 163384146
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCATATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATATTT
Flanking Amino Acid:
LGYTYAIDLPGSLEETQAWA
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.9
73.5
40.8
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
54
0.21
1.9
76
41.3

Associated Gene:

Gene:
DCT
Ensembl Gene ID:
ENSAPLG00000013837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014438
163367528 - 163397173
29646